Our trimodal pLM, ProTrek, is now in @NatureBiotech! Search protein by function, not just seq/struc: BLAST ➡️ 🧬 Seq Foldseek ➡️ 🏗️ Struc ProTrek ➡️ 💡 Func (Text） 🔗 Try: search-protrek.com/ 🐙 GitHub: github.com/westlake-repl/Pro… 📊 5B embeddings: protrek.westlake.edu.cn/
fajie yuan @duguyuan
Aug 22
🚀We just released all embeddings for 6 BILLION proteins! ProTrek's tri-modal AI (seq + structure + function) is now fully open source. Deploy your own protein search server ! 🔬 Try it: search-protrek.com/ 📊 Data: protrek.westlake.edu.cn/ 💻 Code: github.com/westlake-repl/Pro…

Oct 2, 2025 · 2:15 PM UTC

6
30
3
134
paper link: nature.com/articles/s41587-0… We thank the reviewers for their valuable suggestions。

A trimodal protein language model enables advanced protein searches

Nature Biotechnology - A protein foundation model represents protein sequence, structure and function.

nature.com
7
Replying to @duguyuan @NatureBiotech
Congrats
1
Replying to @duguyuan @NatureBiotech
whoa, 6 billion proteins? that's crazy! what kinda implications does this have for synthetic biotech
1
Replying to @duguyuan
Check out our new trimodal pLM ProTrek in @NatureBiotech for searching proteins by function instead of just sequence or structure