squatting here. Please find me on masto (fosstodon.org/@jni) or bsky (bsky.app/profile/jni.codes).
Joined June 2009
- Tweets 8,722
- Following 220
- Followers 1,510
- Likes 2,656
Pinned Tweet
This is great. I'm not that harsh on people that still post here — loss is hard to accept. But *please* just *prioritise* posting to mastodon, even if it feels like you're not getting replies. (1/2)
Juan Nunez-Iglesias retweeted
We just dropped something big @EarthmoverHQ - a new transactional storage engine for @zarr_dev.
🚀 We are thrilled to announce the release of the Icechunk storage engine, a new open-source library and specification for the storage of multidimensional array (a.k.a. tensor) data in cloud object storage.
Read our blog post about Icechunk here: earthmover.io/blog/icechunk
Juan Nunez-Iglesias retweeted
A potential way to generate training data for 3D Stardist is to first apply a Stardist model in 2d, then connect in 3D. I made a video about this, and I'm happy to answer related questions on the Image.sc forum piped.video/watch?v=yjVSd536…
Juan Nunez-Iglesias retweeted
In the absence of a whiteboard @jobragantini used a Labels layer to explain watershed segmentation during #skimage and @napari_imaging tutorial @SciPyConf 🤣
Juan Nunez-Iglesias retweeted
If you want to become a (better) scientist, learn to program. Even if they tell you, "You don't have to because AI will do it for you," learn to program anyway. Hours spent processing data and text often become minutes, thanks to a bit of code, even if you're a newbie in coding
Juan Nunez-Iglesias retweeted
We'll have more highlights when the full release rolls around next week, but for now please test, chat with us on Zulip(1), and raise issues on GitHub(2)! 🙏
(1) release thread: napari.zulipchat.com/#narrow…
(2) github.com/napari/napari/iss…
/end 🧵
Juan Nunez-Iglesias retweeted
Here's a PR demonstrating this for affinder: github.com/jni/affinder/pull…
It's easy *and* it's backwards compatible with 0.4.19 so you can add and release updates to your plugins *today*!
Juan Nunez-Iglesias retweeted
The big new thing is contributable menus! 📋🍽️ Add your plugin's commands to napari menus with just a few extra lines in your napari.yaml. Now commands can be grouped together by function rather than mixed in a plugin salad! 🎉 Read all about it in NAP-6: napari.org/dev/naps/6-contri…
Juan Nunez-Iglesias retweeted
🚨 Attention all naparistas! 🚨
Announcing napari 0.5.0a4 pre-release! 🚀
napari.org/dev/release/relea…
🧵👇
Juan Nunez-Iglesias retweeted
What's your favorite napari tweet, paper, blog post, workshop from the past 6 years? Your favorite napari feature/plugin/workflow? What have you done with napari that you are excited about/proud of? Did you make a scientific discovery helped by napari? Let us know! 🧑🔬 #napariAt6
Juan Nunez-Iglesias retweeted
We know that development has slowed over the past couple of years. We are working on that 🚧😅. There is so much left to do, but today we invite you to celebrate everything we have achieved using the #napariAt6 hashtag! 🎈
Also! I have seen an *overwhelming* amount of amazing napari things over the years so apologies if your thing is not in the two I picked above! It’s also amazing and I am so grateful!!! There’s too many things!!! ❤️ #napariAt6
(I’m about as good at latte art as I am at GUI coding 😅, but don’t worry, my PhD student/napari core dev/napari steering council member/all around amazing person Draga Doncila Pop is better at both so we are in good hands folks! 😊)
btw feel free to post your celebration pictures! 🥳🎂 My local café ran out of pastries so I decided to celebrate with my precious and fading @HHMIJanelia *Farm* mug, where I met @loicaroyer and @sofroniewn years before @napari_imaging. ❤️ Cheers to all our #FOSS community! ☕️🍻
(b) that time @s_i_r_h_c took a still unfinished 3D progressive loading demo by @kisharrington and used it to look at a massive cosmological simulation piped.video/watch?v=ofoURuz-… 🤯 #napariAt6
Ok I’ll start. Can’t narrow it down to one but probably my 2 favourite things I’ve seen:
(a) @lhinderling using napari in a closed loop of acquisition -> segmentation -> interaction -> control 🔁 x.com/lhinderling/status/148… 🤯😍we thought it would take longer to do this!
#napariAt6
6 years ago to the minute 🥳🎂, napari co-founder @loicaroyer made the 1st commit to the “napari-core” repo.
github.com/napari/napari-cor…
Since then, over 150 community members have contributed to the napari code, docs, & tooling, and over 400 plugins have been developed. #napariAt6
Juan Nunez-Iglesias retweeted
TIL that @matplotlib mpl.rc_context can be used as a function decorator if you've got the one function you want to style:
@mpl.rc_context({'lines.linewidth': 3, 'lines.linestyle': '-'})
def plotting_function():
plt.plot(data)
matplotlib.org/devdocs/users…
Juan Nunez-Iglesias retweeted
Hey folks! I'm the creator of Python Pillow & today is my birthday. Can I ask a favor? I'm looking for a new role & I'd appreciate a RT aclark.net/resume/ I'm passionate about open source & making a living doing open source. Next move? Thank you @willmcgugan for the nudge ❤️
Juan Nunez-Iglesias retweeted
Want to learn how to contribute to napari? The next #napariCodeCafe will again be led by @WVierdag on Wed 8 May at 8pm Paris Time (2pm NYC/11am SF). Join Wouter to add the HiLo colormap to napari — handy to check for over/underexposure in your images! forum.image.sc/t/napari-code…
Juan Nunez-Iglesias retweeted
Check out this fantastic video by @truenorth_ia showcasing his new “napari-segment-everything” plugin:
piped.video/watch?v=Ipa3jWnL…
We love it because it highlights the power of napari’s dimension-agnostic approach to data vis! 😍
Juan Nunez-Iglesias retweeted
Naparistas, or anyone who does image analysis in Python — reminder — we want to hear from you! Please fill in our survey, which will close at the end of Feb 23 Anywhere on Earth! What do you *really* have better to do on Friday night, hmmm? 😂 Thank you!
bit.ly/napari-survey-2023-t