Computational cancer-immunology and tumour microenvironment @SAiGENCI (co-appointment @WEHI_research), VCA fellow @VicGovDH
Joined January 2014
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ABACBS/BioC Asia 2025 Workshops are coming! @ Adelaide 27-28 November.
Join us for two days of deep-dive sessions on scalable bioinformatics, spatial omics, metagenomics, AI-driven genomics, and more!
Subscribe -> blackochrelabs.au/abacbs2025…
#Bioinformatics @abacbs @Bioconductor
Very intriguing, could be revolutionary.. Researchers suggest one-a-year publication limit
researchprofessionalnews.com…
What a cover! Looking forward to sharing our work with you!
Seminar this Friday July 4th 1.00pm: “Modelling and Democratising the Human Cell Atlas” with @steman_research, Haroon Shakeel & Chen Zhan (@SAiGENCI)
Details & zoom info: doppeldata.au/events/events.…
#Bioinformatics #SingleCell #HumanCellAtlas #Adelaide #Genomics
Stefano Mangiola retweeted
We’re wrapping up our 3-day Spatial Omics in R/
Bioconductor workshop!
A huge THANK YOU to @steman_research, Malvika and all our attendees who made this event a success
🎉 Until next time — physalia-courses.org/courses…🧬🗺️
#SpatialOmics #Bioconductor #RStats
Today, I had a blast at the @MelbIntGen MIG symposium, showcasing our use of mixed linear models at scale and #AI tools to study #singlecell cancer immunology.
Thanks @heejungshim @mixOmics_team and all the MIG!
events.unimelb.edu.au/MIG/ev…
Amazing crew! Tomorrow, we will show the Physalia crew how to use #tidyomics to manipulate and analyse spatial data!
🚀 Just kicked off our Spatial Omics in R/Bioconductor course with @steman_research
In this 3-day course, we're gonna explore spatial technologies & hands-on data analysis in R and Bioconductor using tidy principles🧬🧠📊
physalia-courses.org/courses… #SpatialOmics #RStats
Very happy to have worked with @drbhupinderpal, @TonyPapenfuss, Dr Belinda Yeo, @delphine_merino for this exciting study.
A promising new research stream to monitor metastatic disease using the immune system. 🚀
Excited to share our new study showing circulating immune cells reflect metastatic burden in breast cancer doi.org/10.1186/s13058-025-0…
Huge thanks to amazing collaborators @steman_research (Stefano Mangiola), @TonyPapenfuss, Dr Belinda Yeo, @delphine_merino, and the ONJCRI team.
In a few hours, we have the second #tidyomics meeting! where we will talk about workshops, communication, education and more.
Thursday ,March 27 ,meeting time 12:00 CET
Join the Bioconductor slack channel to learn more #tidiness_in_bioc channel.
Join us!
Great first #tidyomics meeting, covering 3 continents! 🌍
We discussed data representation with #tidyprint. Stay tuned for the next one to discuss workshop delivery, education and more!
Join the slack channel #tidiness_in_bioc community-bioc.slack.com/arc…
We encourage diverse participation regardless of background, gender, or beliefs.
The meetings are friendly and open!
You don't need to participate actively; you can join simply to stay updated on #tidyomics development.
We welcome you!
Great first #tidyomics meeting, covering 3 continents! 🌍
We discussed data representation with #tidyprint. Stay tuned for the next one to discuss workshop delivery, education and more!
Join the slack channel #tidiness_in_bioc community-bioc.slack.com/arc…
Tomorrow, we will have our first #tidyomics meeting for 2025! We will discuss how to centralise tidy display for biological data -> github.com/tidyomics/tidypri…
Wednesday 12th of March
- 4PM NY
- 9PM London
- 8AM (Thursday) Melbourne
details -> community-bioc.slack.com/arc…
Pls share!
Stefano Mangiola retweeted
🚀 Interested Spatial Omics with R/Bioconductor? 🧨Do you want to learn how to analyse these data in R with the #tidyverse? Join us in May for this course with @steman_research & @LGMartelotto
🔗 physalia-courses.org/courses…
#SpatialOmics #Bioinformatics #RStats
Tomorrow, we will have our first #tidyomics meeting for 2025! We will discuss how to centralise tidy display for biological data -> github.com/tidyomics/tidypri…
Wednesday 12th of March
- 4PM NY
- 9PM London
- 8AM (Thursday) Melbourne
details -> community-bioc.slack.com/arc…
Pls share!
📢An exciting #Postdoc position opened in our laboratory for a junior #Bioinformatician!
Developing #Bioinformatic and #AI tools to advance precision oncology using the available #singlecell / #spatial data universe.
careers.adelaide.edu.au/cw/e…
#postdocposition
We just launched #sccomp for #Python!
Testing for differences in cell-type proportion in #singlecell #spatial data?
#sccomp is a mixed-effect Bayes model
- Use Sum-constrained BetaBinomial
- Outliers detect.
- 🧹 unwanted effects
github.com/MangiolaLaborator…
🙏 @zhanchen2603
Would you open your paper to a modular open-collaboration model?
It was game-changing for #tidyomics
If you love #crowdResearch and #CommunityBuilding have your say on the #crowdToPaper model guidelines
Comment on the shared doc: docs.google.com/document/d/1…
Please share 🙏
📢🙏 Dear Community! A call 👇 to contribute to defining the #guidelines of the #CrowdToPaper research model, as tested for tidyomics doi.org/10.1038/s41592-024-0…
We welcome feedback from all research fields through comments on docs.google.com/document/d/1…
🙏 Plz Share!❤️Thank you!