Functional human genomics @ KTH, SciLifeLab, NY Genome Center. Pro science here, more fun stuff fun at @tuuliel. Mastodon tuuliel_lab@genomic.social

Stockholm / New York City
Joined May 2020
One month until the CSHL Biology of Genomes abstract deadline! My all-time fav meeting, and one of the few covering genomics broadly. We have a ✨🤩 lineup of speakers, but it's the abstract talks & posters that make the meeting - send us your best work! meetings.cshl.edu/meetings.a…
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🌟 Exciting news: The Leena Peltonen School of Human Genetics returns in 2025! We're excited to bring PhD students together with an all-star list of leaders in human genetics. 📅 July 27-31, 2025 📍 Wellcome Genome Campus, UK 📝 Apply by March 7 at lpshg.com
Lappalainen Lab retweeted
GTEx (@GTExPortal), the most comprehensive multi-tissue #transcriptomics resource out there, has now released a new data version (v10)📢 👉12% more RNA-seq samples in total 👉23% more samples in eQTL analyses 🔗gtexportal.org/home/home/new…
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Lappalainen Lab retweeted
Pooled CRISPR screens with joint single-nucleus chromatin accessibility and transcriptome profiling go.nature.com/4hXER5O
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Lappalainen Lab retweeted
I know many of you have been awaiting us launching transcript expression data in gnomAD. We were waiting for the GTEx v10 release which is now out so we are finally able to launch this. Enjoy!!
Proportion expressed across transcripts (pext), using GTEx v10, is now available on #gnomAD v4!
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Lappalainen Lab retweeted
Are you passionate about software development and eager to make a meaningful impact in healthcare? Join our team at FinnGen, one of the largest genetics research projects globally! Location: Helsinki, Finland @FIMM_UH @helsinkiuni Apply by 16 Dec here⬇️: jobs.helsinki.fi/job-invite/…
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A new initiative from @ngisweden! OpenLab is an accessible, equipped lab space for genomics researchers to pursue their assays, filling the gap between a service facility and people's individual research labs. Pilot in Uppsala, with hopes to expand it to other locations.
I am very proud to be part of this project. Come and celebrate the opening of NGI OpenLab in January with us. 🧬 🧪 scilifelab.se/event/ngi-open…
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Lappalainen Lab retweeted
Single molecule biology 💕 NGS! Today we had the pleasure to host the brilliant @SebastianDeindl where he walked us trough their clever adaptation of #miseq sequencing to combine single-molecule fluorescence microscopy with sequencing to profile dynamics of single molecules.
Lappalainen Lab retweeted
Excited to launch the @HelmholtzMunich Imputation Server, enabling genotype imputation within the EU and beyond. Lots of plans for future development, reference panels and functionality enhancement rdcu.be/d0h3y
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Lappalainen Lab retweeted
Honored to be part of this year’s Data-Driven Life Science #DDLS annual meeting, such a great opportunity to connect with fellow DDLS leaders and explore their fantastic work. Grateful to be part of this talented community. Thanks to @KAWstiftelsen and @scilifelab for organizing!
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Lappalainen Lab retweeted
I am so proud of this new lab preprint: Take a look and discover how immune aging differs between males and females!
📢NEW PREPRINT ALERT Thrilled to share our latest work “Single-cell atlas of the human immune system reveals sex-specific dynamics of immunosenescence” (shorturl.at/jpv0S) @mariasopenarios @aidarripoll @marta_mele_m Does immune aging differ between sexes? Learn more here🧵
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Lappalainen Lab retweeted
🚨🚨🚨 Thrilled to share our newest study — identifying functional long noncoding RNAs using transcriptome-scale RNA-targeting CRISPR screens. 🔎🔎🔎 We hope this scalable approach will be helpful for folks who want to connect noncoding RNAs to phenotypes & diseases.
Now online! Transcriptome-scale RNA-targeting CRISPR screens reveal essential lncRNAs in human cells dlvr.it/TG6t4q
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Lappalainen Lab retweeted
For many traits there is a correlation between the number of duplications or loss-of-function (LoF) mutations someone carries, and their phenotype. Curiously, for most traits, these effects are aligned in the SAME direction. Why?
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I took a huge pay cut NY -> Stockholm, but my living expenses also dropped by half - and it would have been more if we had kids. Many places in the UK have the unfortunate combo of ⬇️salaries and ⬆️ expenses, but many EU countries are totally competitive with the US academia.
Starting salaries at Cambridge are less than $70k for most fields. Stanford? Double that. As someone trying to hire the best global talent to work on UK and EU projects, I can't compete with the American universities. One election won't change that.
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Lappalainen Lab retweeted
FinnGen continues to be one of the best genetic datasets in the world with some of the best phenotype data, and now they've reached their goal of 500k (same size as UK BioBank)! Truly, the gift that keeps on giving
Last autumn FinnGen hit its target of sampling close to 10% of the Finnish population with more than 500,000 participants. We are happy to announce that the results based on the full cohort are now publicly available for the whole research community: finngen.fi/en/results-based-…
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Lappalainen Lab retweeted
Today, we mourn the loss of Thomas Lehner, PhD, MPH (1960-2024), a pioneering figure in neuropsychiatric genetics and an inspiration to Columbia Psychiatry. Dr. Lehner was known for his warmth, humility, and dedication to diversity in research, leaving an irreplaceable void in our department and the broader scientific community.
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Lappalainen Lab retweeted
For no reason in particular, I would like to remind everyone that we have a Functional Genomics faculty position opening at the @DonnellyCentre at the University of Toronto (in Canada 🇨🇦) 👀 #ASHG24 jobs.utoronto.ca/job/Toronto…
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Lappalainen Lab retweeted
New work from the team! Can we emulate trials within a biobank? And how can we use genetics to ensure the trial is well-emulated? Integrating genetics in trial emulations improves their design and informs the value of polygenic scores for prognostic and predictive enrichment
🚀Excited to share our new preprint on integrating genetic data into target trial emulations to improve clinical study design! On #electionday2024 and the first day of #ASHG24, our work highlights how genetic insights can bring greater rigor and clarity to real-world evidence🧬🧵
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Lappalainen Lab retweeted
Excited to be presenting at my first #ASHG conference! Hop to session 11-“All the single cells” and learn about the interplay between genetic variants and cellular and molecular aging phenotypes! #ASHG2024
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Lappalainen Lab retweeted
Last autumn FinnGen hit its target of sampling close to 10% of the Finnish population with more than 500,000 participants. We are happy to announce that the results based on the full cohort are now publicly available for the whole research community: finngen.fi/en/results-based-…
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